AutoED documentation

AutoED is a Python package for the automated processing of electron diffraction data collected at Diamond Light Source’s Electron Bio-Imaging Centre (eBIC). These pages provide essential documentation on how to install, use, and configure the package and its internal structure.

Contents:

• Installation
  • Usage
• How AutoED works
  • Watching the filesystem
  • Processing pipelines
• AutoED reports
• Configuring AutoED
• Defining new pipelines
  • Writing the script field in a pipeline definition
  • Conditional pipelines
• AutoED multiplex
  • Multiplex samples
• Beam position methods
  • Maximum pixel intensity method
  • Midpoint method
  • Inversion method